PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01871.1.p
Common NameEUGRSUZ_D01871, LOC104441771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 119aa    MW: 12826.8 Da    PI: 7.5186
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01871.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC111.45e-35201001897
             NF-YC  18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                        h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw+ + + k+rtl+k d+a+av+ tdifdflv+ v 
  Eucgr.D01871.1.p  20 PHSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEELTKRSWMMTMQGKKRTLQKDDVASAVAATDIFDFLVNLVS 100
                       599**********825689**********************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.29E-271495IPR009072Histone-fold
PfamPF008084.7E-212286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-3223100IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MRQPGVYSGM LSGISGKTGP HSLPLARIKK IMKKSGDDVK MISGEAPIVF SKACELFIEE  60
LTKRSWMMTM QGKKRTLQKD DVASAVAATD IFDFLVNLVS EPPNTDEDAA GGTNIIEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-27219940117HapE
4g92_C2e-27219940117HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01871.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053291.11e-83PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9SMP03e-33NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
SwissprotQ9ZVL31e-33NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA0A059CGQ11e-83A0A059CGQ1_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s09100.11e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17140911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.39e-35nuclear factor Y, subunit C3